Author Archives: Mike
Media
LB (Luria-Bertani) medium Commercially available: or use the following recipe: To 950 mls of ultrapure water, add 10g bacto-tryptone 5g bacto-yeast extract 10g NaCl. 15g bacto-agar, to solidify. Mix, autoclave. PH to … Continue reading
Recipes
Stock solutions 70% Ethanol (1L) 736 ml 95% ethanol. Bring up to 1 L with nanopure water.Don’t autoclave. EDTA 0.5 M To prepare 500 ml, 0.5M EDTA pH 8.0: Add 84 g of disodium EDTA•2H2O to 300 ml … Continue reading
Primer Preparation
Primers are delivered as dry pellets and can be storage at 4C. -Use sterile 1.5ml centrifuge tubes, add to each primer tube received 1ml nuclease free water using filter tips. -Adjust the concentration of your primers to a final of … Continue reading
Working with RNA
When working with RNA: Nucleases (RNases) can destroy RNA and ARE EVERYWHERE, so you should: Prepare an RNAse free working environment. Wear gloves while handling reagents and RNA samples to prevent RNase contamination from the surface of the … Continue reading
How to make Solutions
| simple dilution | serial dilution | VC=VC method | molar solutions | percent concentrations | molar – % conversions 1. Simple Dilution (Dilution Factor Method) A simple dilution is one in which a unit volume of a … Continue reading
Basic PCR
Basic PCR, 25 ul Use tips and tubes nuclease free VOL … Continue reading
Digestion of DNA with restriction endonucleases
Reaction EX: For a 20 ul total volume of reaction (15 ug DNA) 5 ul DNA: Maximum DNA 1/3 of total volume 2 ul Buffer 10X: Maximum 1/10 of total volume 2 ul enzyme: NEB … Continue reading
Southern Blots
Digest good-quality genomic or plasmid DNA to completion with restriction enzymes. Use AT LEAST 1 ug of genomic DNA per lane; 10 micrograms per lane is ideal. If more than one DNA sample is to be compared, you should load … Continue reading
Nucleic acid concentration and/or cleaning
Protocol used to concentrate poly(A)+ mRNA, RNA, DNA. Also to clean reactions from buffers and others that may interfere in dowstream reactions. 1. Add 1/10 volume 3 M NaAc (Sodium acetate) and 3 volumes of cool ethanol 95% (high … Continue reading
Plasmid Rescue
Vectors contain sequences that allow plasmid recovery (rescue) including genomic sequences from the transformed fungus. Sequences required for plasmid rescue are a bacterial origin of replication and an antibiotic resistance gene (e.g. Ampicillin or Kanamycin resistance). In addition, unique … Continue reading