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215878e93f0b08fdf2b970ca39d06536
0598633be341a40478786929c5ac2e62
Outstanding doctoral research award to JM Sanz-Martín!
Our past student José María Sanz Martín was just awarded the premio extraordinario de doctorado award for outstanding research during his Ph.D. research. Congratulations Jose!
New insights into the evolution and structure of Colletotrichum plant-like subtilisins (CPLSs)
V Armijos-Jaramillo, Vargas, W.A., Sukno, S.A and Thon, M.R. 2013. Communicative & Integrative Biology 6:6
Protected: Bioinformatica 2011
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GO Slim Analysis
Controlled vocabularies such as the Gene Ontology enable you to compare large numbers of genes and find differences in gene content. In this exercise we will compare the gene content of two fungi. 1. Programs such as PoGO and BLAST2GO … Continue reading
Phylogenetic Analysis Tutorial
Tutorial 1: Comparing gene trees and species trees. Among three species of fungi in the Class Sordariomycetes, there are three possible species trees (including an outgroup). In this tutorial, we will construct three gene trees and compare them to the … Continue reading
PROSITE Patterns Tutorial
Note: before beginning these tutorials, import the file (hydrophobins.geneious) into Geneious. Tutorial 1. Finding proteins that match a pattern. 1. Proteins that are secreted through the Agrobacterium tumefaciens type IV secretion system are reported to have the C terminal consensus pattern … Continue reading
Gene Identification Tutorial
DNA Sequence for these tutorials: oryza.fasta a segment of genomic DNA from (Oryza sativa). 1. First, we will align ESTs to the genomic DNA with BLASTN. Open the link to the Oryza genomic DNA segment above and copy/paste it into Geneious. … Continue reading
Multiple Sequence Alignment Tutorial
Making and Evaluating Multiple Sequence Alignments BALiBASE is a database of manually edited multiple sequence alignments (MSAs) used to evaluate new multiple sequence alignment algorithms. In this exercise we will use MSAs from BALiBASE to evaluate the performance of several … Continue reading