Category Archives: Uncategorized

Outstanding doctoral research award to JM Sanz-Martín!

Our past student José María Sanz Martín was just awarded the premio extraordinario de doctorado award for outstanding research during his Ph.D. research.  Congratulations Jose!

Posted in News, Uncategorized | Comments Off on Outstanding doctoral research award to JM Sanz-Martín!

New insights into the evolution and structure of Colletotrichum plant-like subtilisins (CPLSs)

V Armijos-Jaramillo, Vargas, W.A., Sukno, S.A  and Thon, M.R. 2013. Communicative & Integrative Biology  6:6 

Posted in Publications, Recent Publications, Uncategorized | Comments Off on New insights into the evolution and structure of Colletotrichum plant-like subtilisins (CPLSs)

Protected: Bioinformatica 2011

There is no excerpt because this is a protected post.

Posted in Uncategorized | Comments Off on Protected: Bioinformatica 2011

GO Slim Analysis

Controlled vocabularies such as the Gene Ontology enable you to compare large numbers of genes and find differences in gene content.  In this exercise we will compare the gene content of two fungi. 1. Programs such as PoGO and BLAST2GO … Continue reading

Posted in Uncategorized | Comments Off on GO Slim Analysis

Phylogenetic Analysis Tutorial

Tutorial 1: Comparing gene trees and species trees. Among three species of fungi in the Class Sordariomycetes, there are three possible species trees (including an outgroup).  In this tutorial, we will construct three gene trees and compare them to the … Continue reading

Posted in Uncategorized | Comments Off on Phylogenetic Analysis Tutorial

PROSITE Patterns Tutorial

Note: before beginning these tutorials, import the file (hydrophobins.geneious) into Geneious. Tutorial 1.  Finding proteins that match a pattern. 1.  Proteins that are secreted through the Agrobacterium tumefaciens type IV secretion system are reported to have the C terminal consensus pattern … Continue reading

Posted in Uncategorized | Comments Off on PROSITE Patterns Tutorial

Gene Identification Tutorial

DNA Sequence for these tutorials: oryza.fasta a segment of genomic DNA from (Oryza sativa). 1. First, we will align ESTs to the genomic DNA with BLASTN.  Open the link to the Oryza genomic DNA segment above and copy/paste it into Geneious. … Continue reading

Posted in Uncategorized | Comments Off on Gene Identification Tutorial

Multiple Sequence Alignment Tutorial

Making and Evaluating Multiple Sequence Alignments BALiBASE is a database of manually edited multiple sequence alignments (MSAs) used to evaluate new multiple sequence alignment algorithms.  In this exercise we will use MSAs from BALiBASE to evaluate the performance of several … Continue reading

Posted in Uncategorized | Comments Off on Multiple Sequence Alignment Tutorial

Protected: file upload

There is no excerpt because this is a protected post.

Posted in Uncategorized | Comments Off on Protected: file upload

Protected: manuscrito de Davi

There is no excerpt because this is a protected post.

Posted in Uncategorized | Comments Off on Protected: manuscrito de Davi